PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.4.779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 543aa    MW: 60094.3 Da    PI: 9.5906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.4.779.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-054866220
                 EETTTTEEESSHHHHHHHH CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHi 20
                 +C  Cg+sF+  + L++Hi
  gw1.4.779.1 48 RCRVCGRSFKAYDALEQHI 66
                 7*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0274770IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1184775IPR007087Zinc finger, C2H2
PROSITE patternPS0002804970IPR007087Zinc finger, C2H2
SuperFamilySSF576672.86E-7301339No hitNo description
SMARTSM004515.3E-5306340IPR003604Zinc finger, U1-type
SMARTSM0035520309333IPR015880Zinc finger, C2H2-like
PfamPF128744.7E-4310333No hitNo description
PROSITE patternPS000280311333IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.1330.303.9E-14404504IPR02906450S ribosomal protein L30e-like
SuperFamilySSF553153.53E-17405503IPR02906450S ribosomal protein L30e-like
PfamPF012483.2E-13405495IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
STSRRVDASS SKGAVAHVAG MPKFPVITAE LLRSESRLSP MDKFGKVRCR VCGRSFKAYD  60
ALEQHIGASH FGLNNPYAKV LESARIAAGL APSGKDRINR VSLKLGDLVS SESKTSNSMV  120
NSLAAYFKPE RTKHKSVEKK EGNVHGGQMV RSTNAATSTG MVLRRGVERK DGKKKRHSTL  180
KKIILRERTM RREEETKKLV EEEVEVEIEV RVNWVYVRVS YEDDACRVRL MCMEEDEDDD  240
EEDDEMGEDE EVSARDPDAR EKLETLDERA PAGAWGARSL LAVLKTKDES AEDAKKKTQT  300
VVKAKQTPRT CAMCDVQCFG ERAWEEHVKG KAHAKKVALR DDPAAAKKLA AARAASGTTY  360
VGETGAESVR YAEQIITNEL NESTKTLLST LKRFQDRLYH TDKIKAKQRR RLLYGLREVA  420
KSVDAGTSKV IILAPNIEKI ESEGGLDDRI NEIIARAREN GVPIVVALTK RRVGKALGIP  480
SAVSVVSVLD YDGADEEFKR TVRLAAEGRA LYVKAQKRGK EDETTRVAAS TFDLGAKEFV  540
PAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003079049.10.0unnamed protein product
TrEMBLQ01A690.0Q01A69_
STRINGQ01A690.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP76555